BioBlocks

BioBlocks Bulletin
Vol. 8 June 2009

Bioblocks Bulletin  
Welcome to the BioBlocks Bulletin

The BioBlocks Bulletin brings you recent research on key classes of building blocks. In this issue we describe a new class of kinase targeted amine building blocks, or kinamines. Although members of this family have been used extensively for kinase inhibitor programs, they have to be synthesized in house due to lack of commercial availability. At BioBlocks, we believe that providing SAR options is an important goal, and have initiated a program to generate a range of these versatile compounds in research quantities. If you are interested in a related compound, please contact us for inclusion in the growing set of analogs.

In this issue we present 17 kinase targeted amines – kinamines

The schemes below describes four applications of this product class to a variety of kinase inhibitor structural types. Although traditionally 4-substituted anilines have been used as part of the hinge binding motif, the described examples reveal a more general utility for this building block family:

  • Janus Kinase Modulators (JAK1, JAK2, JAK3 and TYK2)
  • Cyclin Dependent Kinase Inhibitors (CDK4)
  • Anaplastic Lymphoma Kinase Inhibitors (ALK)

Our catalog currently contains 17 items from this class, shown below. Included are a series of Boc protected building blocks that give to the access secondary amine or can be further functionalized to generate a series of related final products. More derivatives are under development and coming soon.

As an introductory offer we can provide 4 x 250 mg of the KAs of your choice for the price of 1 g or 5 x 500 mg for the price of 2.5 g.

Please scroll down to the bottom of the newsletter to view the references. To order products, shop at www.bioblocks.com , call (+1) 858 558-5900 or email sales@bioblocks.com .

 
Application Update
 
  Scheme  
 
KAtable
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KA001-1

KA001-1
4-(Pyrrolidin-1-ylmethyl)aniline hydrochloride
Price: 1g = $240.00
2.5g = $480.00

KA002-1

KA002-1
4-((Diethylamino)methyl)aniline hydrochloride
1g = $240.00
2.5g = $480.00

KA003-1

KA003-1
4-(2-(Pyrrolidin-1-yl)ethyl)aniline hydrochloride
1g = $240.00
2.5g = $480.00

KA005

KA005
4-Piperidin-1-ylmethyl-phenylamine
1g = $300.00
2.5g = $600.00

KA006

KA006
4-Morpholin-4-ylmethyl-phenylamine
1g = $300.00
2.5g = $600.00

KA007

KA007
4-(4-Methyl-piperazin-1-ylmethyl)-phenylamine
1g = $300.00
2.5 = $600.00

KA015

KA015
4-(2-Piperidin-1-yl-ethyl)-phenylamine
1g = $220.00
2.5g = $440.00

KA016

KA016
4-(2-Morpholin-4-yl-ethyl)-phenylamine
1g = $300.00
2.5g = $600.00

KA017

KA017
4-[2-(4-Methyl-piperazin-1-yl)-ethyl]-phenylamine
1g = $300.00
2.5g = $600.00

KA025

KA025
73-[(4-amino-phenylamino)-pyrrolidine-1-carboxylic acid tert-butyl ester
1g = $300.00
2.5g = $600.00

KA026

KA026
3-[(4-amino-phenylamino)-pyrrolidine-1-carboxylic acid tert-butyl ester
1g = $300.00
2.5g = $600.00

KA027

KA027
4-(4-amino-phenylamino)- piperidine-1-carboxylic acid tert-butyl ester
1g = $245.00
2.5g = $490.00

KA028

KA028
4-[(4-amino-phenylamino)-methyl]-piperidine-1-carboxylic acid
1g = $300.00 2.5g = $600.00

KA029

KA029
3-(4-amino-phenylamino)- piperidine-1-carboxylic acid tert-butyl ester
1g = $260.00
2.5g = $520.00

KA030

KA030
3-[(4-amino-phenylamino)-methyl]- piperidine-1-carboxylic acid tert-butyl ester
1g = $265.00
2.5g = $530.00

KA031

KA031
2-[(4-amino-phenylamino)-methyl]- piperidine-1-carboxylic acid tert-butyl ester
1g = $300.00
2.5g = $600.00

KA032-1

KA032-1
2-(4-amino-phenylamino)- piperidine-1-carboxylic acid benzyl ester hydrochloride
1g = $300.00
2.5g = $600.00

Literature References
 
  1. Noronha, Glenn; Cao, Jianguo; Chow, Chun P.; Mak, Chi Ching; Palanki, Moorthy S. S.; Dneprovskaia, Elena; McPherson, Andrew; Pathak, Ved Prakash; Renick, Joel; Zeng, Binqi. Preparation of pyrrolopyrimidine compounds and their use as janus kinase modulators. WO 2009049028 To view article, click here.

  2. In a recently published Targegen patent, aminoanilines are used in the exocyclic position of a pyrrolopyrimidine core. Products derived from KA005 and KA006 showed improved cellular activity, <500 nM, over other heterocycles at the same position.

  3. Tsou, Hwei-Ru; Otteng, Mercy; Tran, Tritin; Floyd, M. Brawner, Jr.; Reich, Marvin; Birnberg, Gary; Kutterer, Kristina; Ayral-Kaloustian, Semiramis; Ravi, Malini; Nilakantan, Ramaswamy; Grillo, Mary; McGinnis, John P.; Rabindran, Sridhar K.4-(Phenylaminomethylene)isoquinoline-1,3(2H,4H)-diones as Potent and Selective Inhibitors of the Cyclin-Dependent Kinase 4 (CDK4). Journal of Medicinal Chemistry (2008), 51(12), 3507-3525 To view article, click here.

  4. In this article, 4,6-substituted isoquinolinediones as selective inhibitors of CDK4 are described by scientists from Wyeth. Potency varied by more than 20 fold depending on the nature of the aniline derived 4 substituent. The same position also had a significant effect on the solubility and selectivity of the final products. In the proposed binding model, the piperidine nitrogen provided by the KA005 starting material interacts with an aspartate on the enzyme.

  5. Li, Rongshi; Xue, Liquan; Zhu, Tong; Jiang, Qin; Cui, Xiaoli; Yan, Zheng; McGee, Danny; Wang, Jian; Gantla, Vidyasagar Reddy; Pickens, Jason C.; McGrath, Doug; Chucholowski, Alexander; Morris, Stephan W.; Webb, Thomas R.Design and Synthesis of 5-Aryl-pyridone-carboxamides as Inhibitors of Anaplastic Lymphoma Kinase. Journal of Medicinal Chemistry  (2006), 49(3), 1006-1015 To view article, click here.
  6. A solid phase synthesis of ALK inhibitors used 4-substituted anilines as amide coupling partners in the last variable step. Changes in both activity and selectivity were observed between the piperazinylaniline and the derivatives separated by 0-3 methylenes. The preferred substitution was the n=1 derivative, from starting material KA007, which gave both good potency and better selectivity versus kinases like IGF1R.

  7. Khire, Uday; Liu, Xiao-Gao; Nagarathnam, Dhanapalan; Wood, Jill; Wang, Lei; Liu, Donglei; Zhao, Jin; Guernon, Leatte; Zhang, Lei. . Quinolone carboxylic acid derivatives for treatment of hyperproliferative conditions, their preparation and pharmaceutical compositions. WO 2005097752 To view article, click here.
  8. Quinolones are well known antibiotics, but in a recent Bayer Pharmaceuticals patent the antitumor activity of this drug class is highlighted. Substitution of the quinolone nitrogen with aromatic groups derived from KA starting materials generates a series of compounds that prevent carcinoma cell growth. Although the target is not disclosed, compound IC50’s are often less than 500 nM when the aniline contains a basic center like that found in KA001-1.